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Documents authored by Morgenstern, Burkhard

Document
Complete Volume
DOI: 10.4230/OASIcs.GCB.2013
OASIcs, Volume 34, GCB'13, Complete Volume

Authors: Tim Beißbarth, Martin Kollmar, Andreas Leha, Burkhard Morgenstern, Anne-Kathrin Schultz, Stephan Waack, and Edgar Wingender

Published in: OASIcs, Volume 34, German Conference on Bioinformatics 2013

Abstract
OASIcs, Volume 34, GCB'13, Complete Volume
Cite as

German Conference on Bioinformatics 2013. Open Access Series in Informatics (OASIcs), Volume 34, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2013)

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@Proceedings{beibarth_et_al:OASIcs.GCB.2013,
  title =	{{OASIcs, Volume 34, GCB'13, Complete Volume}},
  booktitle =	{German Conference on Bioinformatics 2013},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-939897-59-0},
  ISSN =	{2190-6807},
  year =	{2013},
  volume =	{34},
  editor =	{Bei{\ss}barth, Tim and Kollmar, Martin and Leha, Andreas and Morgenstern, Burkhard and Schultz, Anne-Kathrin and Waack, Stephan and Wingender, Edgar},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2013},
  URN =		{urn:nbn:de:0030-drops-42563},
  doi =		{10.4230/OASIcs.GCB.2013},
  annote =	{Keywords: Life and Medical Sciences}
}
Document
Front Matter
DOI: 10.4230/OASIcs.GCB.2013.i
Frontmatter, Table of Contents, Preface, Conference Organization

Authors: Tim Beißbarth, Martin Kollmar, Andreas Leha, Burkhard Morgenstern, Anne-Kathrin Schultz, Stephan Waack, and Edgar Wingender

Published in: OASIcs, Volume 34, German Conference on Bioinformatics 2013

Abstract
Frontmatter, Table of Contents, Preface, Conference Organization
Cite as

German Conference on Bioinformatics 2013. Open Access Series in Informatics (OASIcs), Volume 34, pp. i-xiii, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2013)

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@InProceedings{beibarth_et_al:OASIcs.GCB.2013.i,
  author =	{Bei{\ss}barth, Tim and Kollmar, Martin and Leha, Andreas and Morgenstern, Burkhard and Schultz, Anne-Kathrin and Waack, Stephan and Wingender, Edgar},
  title =	{{Frontmatter, Table of Contents, Preface, Conference Organization}},
  booktitle =	{German Conference on Bioinformatics 2013},
  pages =	{i--xiii},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-939897-59-0},
  ISSN =	{2190-6807},
  year =	{2013},
  volume =	{34},
  editor =	{Bei{\ss}barth, Tim and Kollmar, Martin and Leha, Andreas and Morgenstern, Burkhard and Schultz, Anne-Kathrin and Waack, Stephan and Wingender, Edgar},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2013.i},
  URN =		{urn:nbn:de:0030-drops-42265},
  doi =		{10.4230/OASIcs.GCB.2013.i},
  annote =	{Keywords: Frontmatter, Table of Contents, Preface, Conference Organization}
}
Document
DOI: 10.4230/OASIcs.GCB.2013.24
Alignment-free sequence comparison with spaced k-mers

Authors: Marcus Boden, Martin Schöneich, Sebastian Horwege, Sebastian Lindner, Chris Leimeister, and Burkhard Morgenstern

Published in: OASIcs, Volume 34, German Conference on Bioinformatics 2013

Abstract
Alignment-free methods are increasingly used for genome analysis and phylogeny reconstruction since they circumvent various difficulties of traditional approaches that rely on multiple sequence alignments. In particular, they are much faster than alignment-based methods. Most alignment-free approaches work by analyzing the k-mer composition of sequences. In this paper, we propose to use 'spaced k-mers', i.e. patterns of deterministic and 'don't care' positions instead of contiguous k-mers. Using simulated and real-world sequence data, we demonstrate that this approach produces better phylogenetic trees than alignment-free methods that rely on contiguous k-mers. In addition, distances calculated with spaced k-mers appear to be statistically more stable than distances based on contiguous k-mers.
Cite as

Marcus Boden, Martin Schöneich, Sebastian Horwege, Sebastian Lindner, Chris Leimeister, and Burkhard Morgenstern. Alignment-free sequence comparison with spaced k-mers. In German Conference on Bioinformatics 2013. Open Access Series in Informatics (OASIcs), Volume 34, pp. 24-34, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2013)

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@InProceedings{boden_et_al:OASIcs.GCB.2013.24,
  author =	{Boden, Marcus and Sch\"{o}neich, Martin and Horwege, Sebastian and Lindner, Sebastian and Leimeister, Chris and Morgenstern, Burkhard},
  title =	{{Alignment-free sequence comparison with spaced k-mers}},
  booktitle =	{German Conference on Bioinformatics 2013},
  pages =	{24--34},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-939897-59-0},
  ISSN =	{2190-6807},
  year =	{2013},
  volume =	{34},
  editor =	{Bei{\ss}barth, Tim and Kollmar, Martin and Leha, Andreas and Morgenstern, Burkhard and Schultz, Anne-Kathrin and Waack, Stephan and Wingender, Edgar},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2013.24},
  URN =		{urn:nbn:de:0030-drops-42334},
  doi =		{10.4230/OASIcs.GCB.2013.24},
  annote =	{Keywords: Alignment-free sequence comparison, phylogeny reconstruction}
}
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